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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
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Posts
Protein design partition tournament Permalink
Published:
Introducing a design tournament for Foldit players. Part three of a three-part blog series about the problem of protein design.
Partition functions Permalink
Published:
A partition function describes the energy landscape of a protein. Part two of a three-part blog series about the problem of protein design.
The problem of protein design Permalink
Published:
Discussion of energy landscapes, and how they complicate protein design. Part one of a three-part blog series about the protein design problem.
X-ray diffraction Permalink
Published:
X-ray diffraction experiments and the first crystal structure of a Foldit design.
Protein crystallization Permalink
Published:
Growing a crystal of a Foldit player-designed protein, for crystal x-ray diffraction.
Foldit design update - Part 2 Permalink
Published:
Some promising lab results from recently-tested Foldit designs!
Foldit design update - Part 1 Permalink
Published:
Discussion of protein backbone quality and recent improvements in Foldit designs.
Protein folding pathways Permalink
Published:
A Foldit player’s question about protein folding pathways.
More about the Blueprint Tool Permalink
Published:
More details about the recently-introduced Blueprint Panel in Foldit.
Blueprint panel Permalink
Published:
Introducing a new tool to Foldit: the Blueprint Panel.
Ramachandran map Permalink
Published:
Introducing a new tool in Foldit: the Ramachandran Map.
Sheets and barrels Permalink
Published:
A discussion of beta-sandwiches and beta-barrels, and some design strategies for sheet-rich proteins.
Player designs enter the wet lab Permalink
Published:
Foldit players explore protein folds beyond helical bundles.
The story of a Foldit design Permalink
Published:
A walkthrough of the different experiments we use to test designed proteins in the lab
Improvements in Foldit designs Permalink
Published:
We showcase some of the first Foldit designed proteins to pass computational analysis
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
Effect of Substitution on the Optical Properties and HOMO−LUMO Gap of Oligomeric Paraphenylenes
Published in , 2010
Quantum mechanics calculations and absorption spectra of a para-phenylene dimer with various chemical substitutions.
Determining crystal structures through crowdsourcing and coursework
Published in , 2016
Foldit players build a high-quality protein model, into electron density from experimentally-phased crystallography data.
Download here
De novo protein design by citizen scientists
Published in , 2019
Proteins designed by Foldit players fold accurately, with high stability, and span a diversity of protein folds.
Download here
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.